FIXING GENOMIC DATA DECOMPRESSION ERRORS

  • Done George Stojanov University ,,Goce Delcev"-Stip

Abstract

The problem of genomic data compression/decompression is considered. Unlike current research that depends on reference sequence or template, a new hash-based methodology that does not depended on reference sequence is proposed. By applying the hashing formula which was proposed by Reneker and Shyu, 9 bytes of compression gain per zipped read is possible. However the main emphasis in this paper is put on the correction on errors in genomic data decompression that happen if Renker-Shyu formula is applied.

Published
Dec 12, 2018
How to Cite
STOJANOV, Done George. FIXING GENOMIC DATA DECOMPRESSION ERRORS. Balkan Journal of Applied Mathematics and Informatics, [S.l.], v. 1, n. 2, p. 17-22, dec. 2018. Available at: <http://js.ugd.edu.mk/index.php/bjami/article/view/2319>. Date accessed: 18 jan. 2019.
Section
Articles